Source code for sfepy.discrete.iga.domain

Computational domain for isogeometric analysis.
from __future__ import absolute_import
import os.path as op

import numpy as nm

from sfepy.base.base import assert_, Struct
from sfepy.discrete.common.domain import Domain
from sfepy.discrete.iga import iga
from sfepy.discrete.iga import io
from sfepy.discrete.iga.extmods.igac import eval_in_tp_coors
import six
from six.moves import range

[docs]class NurbsPatch(Struct): """ Single NURBS patch data. """ def __init__(self, knots, degrees, cps, weights, cs, conn): degrees = nm.asarray(degrees, dtype=nm.int32) cs = [nm.asarray(cc, dtype=nm.float64) for cc in cs] if cs[0].ndim == 3: cs = [nm.ascontiguousarray(cc[:, None, ...]) for cc in cs] Struct.__init__(self, name='nurbs', knots=knots, degrees=degrees, cps=cps, weights=weights, cs=cs, conn=conn) self.n_els = [len(ii) for ii in cs] self.dim = len(self.n_els) def _get_ref_coors_1d(self, pars, axis): uk = nm.unique(self.knots[axis]) indices = nm.searchsorted(uk[1:], pars) ref_coors = nm.empty_like(pars) for ii in range(len(uk) - 1): ispan = nm.where(indices == ii)[0] pp = pars[ispan] ref_coors[ispan] = (pp - uk[ii]) / (uk[ii+1] - uk[ii]) return uk, indices, ref_coors def __call__(self, u=None, v=None, w=None, field=None): """ Igakit-like interface for NURBS evaluation. """ pars = [u] if v is not None: pars += [v] if w is not None: pars += [w] indices = [] rcs = [] for ia, par in enumerate(pars): uk, indx, rc = self._get_ref_coors_1d(par, ia) indices.append(indx.astype(nm.uint32)) rcs.append(rc) out = eval_in_tp_coors(field, indices, rcs, self.cps, self.weights, self.degrees, self.cs, self.conn) return out
[docs] def evaluate(self, field, u=None, v=None, w=None): """ Igakit-like interface for NURBS evaluation. """ return self(u, v, w, field)
def _to_igakit(self): import igakit.cad as cad n_efuns = self.degrees + 1 nks = nm.array([len(ii) for ii in self.knots]) shape = tuple(nks - n_efuns) cps = self.cps.reshape(shape + (-1,)) weights = self.weights.reshape(shape) return cad.NURBS(self.knots, cps, weights=weights) def _from_igakit(self, inurbs): cs = iga.compute_bezier_extraction(inurbs.knots, n_els = [len(ii) for ii in cs] conn, bconn = iga.create_connectivity(n_els, inurbs.knots, cps = inurbs.points[..., :self.dim].copy() cps = cps.reshape((-1, self.dim)) return NurbsPatch(inurbs.knots,, cps, inurbs.weights.ravel(), cs, conn)
[docs] def elevate(self, times=0): """ Elevate the patch degrees several `times` by one. Returns ------- nurbs : NurbsPatch instance Either `self` if `times` is zero, or a new instance. """ if times == 0: return self aux = self._to_igakit() for ia in range(self.dim): aux.elevate(ia, times) assert_(nm.isfinite(aux.points).all(), 'igakit degree elevation failed for axis %d!' % ia) return self._from_igakit(aux)
[docs]class IGDomain(Domain): """ Bezier extraction based NURBS domain for isogeometric analysis. """
[docs] @staticmethod def from_file(filename): """ filename : str The name of the IGA domain file. """ data = io.read_iga_data(filename) name = op.splitext(filename)[0] return IGDomain.from_data(*(data + (name,)))
[docs] @staticmethod def read_domain_from_hdf5(fd, group): """ Create a domain from the given hdf5 data group. fd: tables.File HDF5 file handle to read the mesh from. group: HDF5 data group (of file fd) to read the mesh from. """ data = io.read_iga_data(fd, group) return IGDomain.from_data(*data)
[docs] def write_domain_to_hdf5(self, fd, group): """ Save the domain to a hdf5 file. fd: tables.File HDF5 file handle to write the mesh to. group: HDF5 data group (of file fd) to write the mesh to. """ io.write_iga_data(fd, group, *(self._get_io_data() + (,)))
def _get_io_data(self): """ Return the data describing the domain for storing the domain in a hdf5 file. TODO - data for regions recreating """ knots = self.nurbs.knots degrees = self.nurbs.degrees cps = self.nurbs.cps weights = self.nurbs.weights cs = self.nurbs.cs conn = self.nurbs.conn bcps = self.bmesh.cps bweights = self.bmesh.weights bconn = self.bmesh.conn return (knots, degrees, cps, weights, cs, conn, bcps, bweights, bconn, self.vertex_set_bcs)
[docs] @staticmethod def from_data(knots, degrees, cps, weights, cs, conn, bcps, bweights, bconn, regions, name='iga_domain_from_data'): """ Create the IGA domain from the given data. """ nurbs = NurbsPatch(knots, degrees, cps, weights, cs, conn) bmesh = Struct(name='bmesh', cps=bcps, weights=bweights, conn=bconn) domain = IGDomain(name, nurbs=nurbs, bmesh=bmesh, regions=regions) return domain
def __init__(self, name, nurbs, bmesh, regions=None, **kwargs): """ Create an IGA domain. Parameters ---------- name : str The domain name. """ Domain.__init__(self, name, nurbs=nurbs, bmesh=bmesh, regions=regions, **kwargs) from sfepy.discrete.fem.geometry_element import create_geometry_elements from sfepy.discrete.fem import Mesh from sfepy.discrete.fem.utils import prepare_remap tconn = iga.get_bezier_topology(bmesh.conn, nurbs.degrees) itc = nm.unique(tconn) remap = prepare_remap(itc, bmesh.conn.max() + 1) ltcoors = bmesh.cps[itc] ltconn = remap[tconn] n_nod, dim = ltcoors.shape n_el = ltconn.shape[0] self.shape = Struct(n_nod=n_nod, dim=dim, tdim=0, n_el=n_el) desc = '%d_%d' % (dim, bmesh.conn.shape[1]) mat_id = nm.zeros(bmesh.conn.shape[0], dtype=nm.int32) eval_mesh = Mesh.from_data( + '_eval', nurbs.cps, None, [nurbs.conn], [mat_id], [desc]) self.eval_mesh = eval_mesh desc = '%d_%d' % (dim, 2**dim) mat_id = nm.zeros(ltconn.shape[0], dtype=nm.int32) self.mesh = Mesh.from_data( + '_topo', ltcoors, None, [ltconn], [mat_id], [desc]) self.cmesh = self.mesh.cmesh self.cmesh_tdim = self.mesh.cmesh_tdim gels = create_geometry_elements() self.cmesh.set_local_entities(gels) self.cmesh.setup_entities() self.shape.tdim = self.cmesh.tdim self.gel = gels[desc] if regions is not None: self.vertex_set_bcs = {} for key, val in six.iteritems(self.regions): self.vertex_set_bcs[key] = remap[val] self.reset_regions()