Users guide

Installation

Install DICOM2FEM:

git clone --recursive https://github.com/vlukes/dicom2fem.git

Follow the instructions in pyseg_base/INSTALL.

Sample DICOM data can be found at:

• http://www.mathworks.com/matlabcentral/fileexchange/2762-dicom-example-files?download=true
• http://www.osirix-viewer.com/datasets/

Running the program

Command line usage:

$ python src/dicom2fem,py --help
Usage: dicom2fem.py [options]

Options:

  -h, --help                      show this help message and exit
  -d DCMDIR, --dcmdir=DCMDIR      DICOM data direcotory
  -m DCMFILE, --dcmfile=DCMFILE   DCM file with DICOM data
  -s SEGFILE, --segfile=SEGFILE   file with segmented data